Examples
========

.. rubric:: JCP paper experiments

Experiments on the modified Muller-Brown potential (3 states) reported in the mlcolvar JCP paper (https://doi.org/10.1063/5.0156343), describing different learning scenarios. 

.. toctree::
   :maxdepth: 2

   examples_experiments
 
.. rubric:: Literature examples

Examples of usage of data-driven CVs or other tools from the mlcolvar library in the literature. 

.. toctree::
   :maxdepth: 1

   notebooks/examples/ex_DeepLDA.ipynb
   notebooks/examples/ex_DeepTICA.ipynb
   notebooks/examples/ex_TPI-DeepTDA.ipynb
   notebooks/examples/ex_stateinterpreter.ipynb
   notebooks/examples/ex_committor.ipynb
   notebooks/examples/ex_position-less_committor.ipynb